Mandated partnerships that cannot meet the requirements of filing an electronic amended Form 1065 can request a waiver to file such amended return electronically.
A subsequent return filed after the original return will be treated as an amended return, assuming the amended return box is checked. A taxpayer filing an amended return must indicate the return is such by selecting the Amended Return checkbox (designation) in the software or the return will reject as a duplicate filing. The IRS amended return process requires that any e-filed return designated as an amended return pass all of the same business rules as an original e-filed business return. Taxpayers e-filing amended returns should have already filed their underlying tax returns.
For e-filing amended returns for Form 1065, taxpayers under the BBA must file an "Administrative Adjustment Request" (AAR) instead of an "amended return." For guidance for filing Administrative Adjustment Requests for BBA Partnerships, please see IRS.gov/bbaaar
For Form 1065 taxpayers not subject to BBA, the easiest process for e-filing the amended return will be to update the underlying original for the changed items. Once the return has been updated with the changes, attach the Amended Return Statement (see Section A below) and any other supporting explanations and re-file the complete new return, ensuring that the Amended Return checkbox is selected.
For taxpayers who e-filed original returns with voluminous PDF and/or who filed returns that used the paper or PDF option, some of the PDF/paper information may not need to be re-filed with the amended return if the changes do not affect the information contained in those files (e.g. PDF elections, paper/PDF 8858, 8865, etc .)
The requirement to file an electronic return for Form 1065 is governed by Internal Revenue Code section 6011(e)(2) and Treasury Regulations 301.6011-3(a) and 301.6011-3(d)(4).
Treasury Regulation 301.6011-3(a) provides in part that if a partnership with more than 100 partners is required to file a partnership return pursuant to Treasury Regulation 1.6031(a)-1 then the information required by the applicable forms and schedules must be filed on magnetic media.
Treasury Regulation 301.6011-3(a) provides guidance as to the definition of a partnership return. The term “partnership return” as stipulated in the aforementioned regulation, means a form in series 1065, along with the corresponding schedules k-1 and all other related forms and schedules that are required to be attached to the Series 1065 Form.